A Latin Sqaure data set from the manuscript "SuperHirn - a novel tool for high resolution LC-MS based peptide/protein profiling". The available data spans the raw as well as preprocessed LC-MS runs (e.g. detected MS1 features), collected MS2 peptide identifications processed on the TransProteomicsPipeline (TPP) and the constructed MasterMaps. The dilution outline is perfomed over 6 LC-MS runs over which the concentrations of 6 standart proteins are altered and each of the LC-MS runs is anaylzed in triplicates.